Match details
Record ID: |
KT366166.1 |
Database: |
nt |
Go to original record |
Description: |
Merinthopodium vogelii isolate LB3266 tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Merinthopodium vogelii |
Original size: |
1716 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
736 |
1307 |
+ |
572 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgatcacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctgaaaacaa acaaaggttc
151 agacaaaaag gataggtgca gagactcaac ggaggctatt ctaacaaatg
201 gagttaaatg cgttggtaga ggaatcttta catcgaaact tcagaaagaa
251 aaagaatgaa gggaaggata aacgtatata catacgtatt gaatactcta
301 tcaaatgatt aatgacgaac cgaatccgta ttttttctat aaaaaataga
351 agaattggtg tgaatcgatt ctccattgaa gaaagaatcg aatattcgtt
401 gatcaaatca ttcactccca tagtctgata gatcttttga agaactgatt
451 aatcggacga gaataaagat agagtcccgt tctacatgtc aataccggca
501 acaatgaaat ttatagtaag aggaaaatcc gtcgacttta aaaatcgtga
551 gggttcaagt ccctctatcc cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.58e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
572 |
553 |
2.58e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.