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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KM524063.1 nt Colpodium versicolor voucher US:Sor... 1740 bp Colpodium versicolor QL-PLN-00-007 619 bp View
KM524064.1 nt Dupontia fisheri voucher CAN:Gilles... 1799 bp Dupontia fisheri QL-PLN-00-007 613 bp View
KM524065.1 nt Dupontia fisheri voucher CAN:Gilles... 1775 bp Dupontia fisheri QL-PLN-00-007 613 bp View
KM524066.1 nt Dupontiopsis hayachinensis voucher ... 1772 bp Dupontiopsis hayachinensis QL-PLN-00-007 613 bp View
KM524067.1 nt Dupontiopsis hayachinensis voucher ... 1773 bp Dupontiopsis hayachinensis QL-PLN-00-007 613 bp View
KM524068.1 nt Gaudinopsis macra voucher CAN:Gille... 1749 bp Gaudinopsis macra QL-PLN-00-007 617 bp View
KM524069.1 nt Hookerochloa hookeriana voucher CAN... 1781 bp Hookerochloa hookeriana QL-PLN-00-007 620 bp View
KM524070.1 nt Hyalopoa pontica voucher US:Soreng ... 1707 bp Hyalopoa pontica QL-PLN-00-007 611 bp View
KM524071.1 nt Milium effusum voucher CAN:Gillespi... 1823 bp Milium effusum QL-PLN-00-007 618 bp View
KM524072.1 nt Milium effusum voucher US:Soreng & ... 1821 bp Milium effusum QL-PLN-00-007 618 bp View
KM524073.1 nt Milium schmidtianum voucher US:Sore... 1773 bp Milium schmidtianum QL-PLN-00-007 614 bp View
KM524074.1 nt Milium vernale voucher CAN:Gillespi... 1711 bp Milium vernale QL-PLN-00-007 614 bp View
KM524076.1 nt Paracolpodium altaicum voucher US:O... 1711 bp Paracolpodium altaicum QL-PLN-00-007 611 bp View
KM524079.1 nt Phleum alpinum voucher CAN:Saarela ... 1785 bp Phleum alpinum QL-PLN-00-007 611 bp View
KM524080.1 nt Phleum exaratum voucher CAN:Gillesp... 1779 bp Phleum exaratum QL-PLN-00-007 611 bp View
KM524081.1 nt Phleum montanum voucher CAN:Gillesp... 1768 bp Phleum montanum QL-PLN-00-007 605 bp View
KM524082.1 nt Phleum phleoides voucher US:Soreng ... 1767 bp Phleum phleoides QL-PLN-00-007 604 bp View
KM524083.1 nt Phleum pratense voucher CAN:Saarela... 1744 bp Phleum pratense QL-PLN-00-007 610 bp View
KM524084.1 nt Phleum pratense voucher US:Soreng e... 1777 bp Phleum pratense QL-PLN-00-007 610 bp View
KM524085.1 nt Phleum subulatum voucher CAN:Gilles... 1770 bp Phleum subulatum QL-PLN-00-007 609 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.