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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ871005.1 nt Thamnocalamus spathiflorus voucher ... 139498 bp Thamnocalamus spathiflorus QL-PLN-00-007 614 bp View
KJ920226.1 nt Chaetobromus involucratus subsp. dr... 132725 bp Chaetobromus involucratus subsp. dregeanus QL-PLN-00-007 611 bp View
KJ920234.1 nt Micraira sp. JLC-2014 plastid, comp... 135318 bp Micraira sp. JLC-2014 QL-PLN-00-007 610 bp View
KJ953903.1 nt Aganosma cymosa voucher D. J. Middl... 153816 bp Aganosma cymosa QL-PLN-00-007 561 bp View
KJ953905.1 nt Epigynum auritum voucher D. J. Midd... 153838 bp Epigynum auritum QL-PLN-00-007 560 bp View
KJ953906.1 nt Neobracea bahamensis voucher M. Vin... 155693 bp Neobracea bahamensis QL-PLN-00-007 578 bp View
KJ953910.1 nt Periploca sepium voucher T. Livshul... 143188 bp Periploca sepium QL-PLN-00-007 559 bp View
KJ953911.1 nt Rhabdadenia biflora voucher S. Zona... 153376 bp Rhabdadenia biflora QL-PLN-00-007 567 bp View
KJ953913.1 nt Wrightia natalensis voucher S. P. B... 155244 bp Wrightia natalensis QL-PLN-00-007 571 bp View
KM057376.1 nt Berberis amurensis var. quelpaerten... 166630 bp Berberis amurensis var. quelpaertensis QL-PLN-00-007 562 bp View
KM057377.1 nt Berberis amurensis var. latifolia c... 166645 bp Berberis amurensis var. latifolia QL-PLN-00-007 562 bp View
KM088021.1 nt Oryza glaberrima chloroplast, compl... 134598 bp Oryza glaberrima QL-PLN-00-007 615 bp View
KM088022.1 nt Oryza nivara chloroplast, complete ... 134516 bp Oryza nivara QL-PLN-00-007 615 bp View
KM088023.1 nt Oryza barthii chloroplast, complete... 134590 bp Oryza barthii QL-PLN-00-007 615 bp View
KM088024.1 nt Oryza longistaminata chloroplast, c... 134558 bp Oryza longistaminata QL-PLN-00-007 615 bp View
KM103370.1 nt Oryza glaberrima voucher IRGC103937... 134598 bp Oryza glaberrima QL-PLN-00-007 615 bp View
KM103372.1 nt Oryza rufipogon voucher W1588 chlor... 134510 bp Oryza rufipogon QL-PLN-00-007 615 bp View
KM103373.1 nt Oryza meridionalis voucher W1943 ch... 134556 bp Oryza meridionalis QL-PLN-00-007 615 bp View
KM103374.1 nt Oryza glumipatula voucher W2112 chl... 134575 bp Oryza glumipatula QL-PLN-00-007 615 bp View
KM103377.1 nt Oryza glaberrima voucher HHU-KNR201... 134586 bp Oryza glaberrima QL-PLN-00-007 615 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.