Match details
Record ID: |
KJ953911.1 |
Database: |
nt |
Go to original record |
Description: |
Rhabdadenia biflora voucher S. Zona 616 (FTG) plastid, partial genome. |
Taxon: |
Rhabdadenia biflora |
Original size: |
153376 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48050 |
48616 |
+ |
567 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagctt tggtaaggaa
51 acctactaag tgatgacttt caaattcaga gaaaccccgg aattaagaaa
101 aagggcaatc ctgagccaaa tcctattttc cacaaacaaa ggttcagaaa
151 acgaaaacaa ggataggtgc agagactcga cggaagctgt tctaacaaat
201 ggagttagcc gcgttggtag agaaatcttt ccatcgaaaa ttcagaaagg
251 atgaaggata tacatacgta ttgaatacta tatcaaaatc aaatgattaa
301 tgctgacccg aatgaatctg tatttttttc tataaaaaaa cggaagaatt
351 ggtatgattt gattctttct tcaatgtgga atcgaatatt cattgatcaa
401 ataattcact ccatagtctg tagatcctct tttcaagaac ggattaatcg
451 gacgagaata aagatagagt cccgttctac atgtcaatgc tggcaacaat
501 gaaatttata gtaagaggaa aatccgtcga cttaaaaaat cgtgagggtt
551 caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
567 |
548 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.