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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KF905189.1 nt Elymus excelsus isolate EI_201203 t... 1006 bp Campeiostachys dahurica var. excelsa QL-PLN-00-007 598 bp View
KF905217.1 nt Elymus dahuricus var. cylindricus i... 1007 bp Campeiostachys dahurica var. cylindrica QL-PLN-00-007 598 bp View
KF922718.1 nt Neobartsia inaequalis chloroplast, ... 151349 bp Neobartsia inaequalis QL-PLN-00-007 551 bp View
KF965154.1 nt Aidia sp. Luke 8317 isolate AF087 t... 1667 bp Aidia sp. Luke 8317 QL-PLN-00-007 567 bp View
KF965155.1 nt Alibertia edulis isolate BR065 trnT... 1661 bp Alibertia edulis QL-PLN-00-007 567 bp View
KF965156.1 nt Alibertia edulis isolate L066 trnT-... 1672 bp Alibertia edulis QL-PLN-00-007 567 bp View
KF965159.1 nt Aoranthe penduliflora isolate O059 ... 1668 bp Aoranthe penduliflora QL-PLN-00-007 576 bp View
KF965160.1 nt Atractocarpus bracteatus isolate BQ... 1648 bp Atractocarpus bracteatus QL-PLN-00-007 567 bp View
KF965161.1 nt Atractogyne gabonii isolate BR024 t... 1704 bp Atractogyne gabonii QL-PLN-00-007 567 bp View
KF965164.1 nt Aulacocalyx jasminiflora isolate AQ... 1667 bp Aulacocalyx jasminiflora QL-PLN-00-007 567 bp View
KF965167.1 nt Botryarrhena venezuelensis isolate ... 1674 bp Botryarrhena venezuelensis QL-PLN-00-007 567 bp View
KF965170.1 nt Bungarimba ridsdalei isolate BY023 ... 1683 bp Bungarimba ridsdalei QL-PLN-00-007 575 bp View
KF965173.1 nt Calycosiphonia spathicalyx isolate ... 1743 bp Calycosiphonia spathicalyx QL-PLN-00-007 565 bp View
KF965174.1 nt Canephora axillaris isolate AK094 t... 1731 bp Canephora axillaris QL-PLN-00-007 572 bp View
KF965175.1 nt Canthiopsis odorata isolate BQ081 t... 1685 bp Tarenna seemanniana QL-PLN-00-007 567 bp View
KF965176.1 nt Ixora margaretae isolate AN062 trnT... 1586 bp Ixora margaretae QL-PLN-00-007 565 bp View
KF965178.1 nt Catunaregam spinosa isolate AF100 t... 1721 bp Catunaregam spinosa QL-PLN-00-007 567 bp View
KF965179.1 nt Ceriscoides sessiliflora isolate BR... 1659 bp Ceriscoides sessiliflora QL-PLN-00-007 567 bp View
KF965181.1 nt Cladoceras subcapitatum isolate AG0... 1721 bp Cladoceras subcapitatum QL-PLN-00-007 567 bp View
KF965183.1 nt Coffea arabica isolate F079 trnT-tr... 1658 bp Coffea arabica QL-PLN-00-007 570 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.