Match details
Record ID: |
KF905217.1 |
Database: |
nt |
Go to original record |
Description: |
Elymus dahuricus var. cylindricus isolate EI_201303 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Campeiostachys dahurica var. cylindrica |
Original size: |
1007 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
598 |
+ |
598 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaagt ggtcctcgaa
151 ctagaggata ggtgcagaga ctcaatggaa gctgttctaa cgaatcgagt
201 taattacgtt gtgttggtag tggaattcct tctaaattag agggagaagg
251 gctttataca tctaataaac acgtatagat actggcatag caaacgatta
301 atcacagaac ccatatcata atataggttc tttattcttt tttagaatga
351 aattaggaaa gattatgaaa taaaaaattc agaatttttt tgaattattg
401 tgaattcatt ccaatcgaat attgagtaat caaatccttc aattcatagt
451 tttcgagatc ttttaaaaag tggattaatc ggacgaggac aaagagagag
501 tcccattcta catgccaata ctggcaacaa tgaaatttct agtaaaagga
551 aaatccgtcg actttataag ttgtgagggt tcaagtccct ctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.69e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
598 |
579 |
2.69e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.