European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KC429706.1 nt Lonicera caerulea var. kamtschatica... 1016 bp Lonicera caerulea var. kamtschatica QL-PLN-00-007 587 bp View
KC429707.1 nt Lonicera caerulea subsp. stenantha ... 1016 bp Lonicera caerulea subsp. stenantha QL-PLN-00-007 587 bp View
KC429708.1 nt Lonicera caerulea var. pallasii tRN... 1015 bp Lonicera caerulea var. pallasii QL-PLN-00-007 587 bp View
KC429709.1 nt Lonicera caerulea var. altaica tRNA... 1011 bp Lonicera caerulea var. altaica QL-PLN-00-007 587 bp View
KC429710.1 nt Lonicera caerulea var. edulis tRNA-... 1009 bp Lonicera caerulea var. edulis QL-PLN-00-007 587 bp View
KC429711.1 nt Lonicera boczkarnikovae tRNA-Leu (t... 1016 bp Lonicera boczkarnikovae QL-PLN-00-007 587 bp View
KC429712.1 nt Lonicera caerulea var. emphyllocaly... 1001 bp Lonicera caerulea var. emphyllocalyx QL-PLN-00-007 572 bp View
KC429713.1 nt Lonicera orientalis tRNA-Leu (trnL)... 1003 bp Lonicera orientalis QL-PLN-00-007 586 bp View
KC429714.1 nt Lonicera venulosa tRNA-Leu (trnL) g... 1005 bp Lonicera venulosa QL-PLN-00-007 576 bp View
KC429715.1 nt Lonicera xylosteum tRNA-Leu (trnL) ... 1004 bp Lonicera xylosteum QL-PLN-00-007 582 bp View
KC429716.1 nt Lonicera chrysantha tRNA-Leu (trnL)... 1002 bp Lonicera chrysantha QL-PLN-00-007 580 bp View
KC439475.1 nt Dracaena cochinchinensis tRNA-Leu (... 1203 bp Dracaena cochinchinensis QL-PLN-00-007 613 bp View
KC439478.1 nt Dracaena cambodiana tRNA-Leu (trnL)... 1101 bp Dracaena cambodiana QL-PLN-00-007 613 bp View
KC539159.1 nt Solanum carolinense isolate LB3340 ... 1776 bp Solanum carolinense QL-PLN-00-007 571 bp View
KC539162.1 nt Solanum carolinense isolate LB3341 ... 1758 bp Solanum carolinense QL-PLN-00-007 571 bp View
KC539165.1 nt Solanum aridum isolate LB2006 tRNA-... 1752 bp Solanum aridum QL-PLN-00-007 571 bp View
KC539166.1 nt Solanum comptum isolate LB1138 tRNA... 1755 bp Solanum comptum QL-PLN-00-007 577 bp View
KC539167.1 nt Solanum comptum isolate LB3342 tRNA... 1769 bp Solanum comptum QL-PLN-00-007 577 bp View
KC539168.1 nt Solanum dimidiatum isolate LB1953 t... 1241 bp Solanum dimidiatum QL-PLN-00-007 571 bp View
KC539171.1 nt Solanum euacanthum isolate LB3291 t... 1839 bp Solanum euacanthum QL-PLN-00-007 571 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.