Match details
Record ID: |
KC439478.1 |
Database: |
nt |
Go to original record |
Description: |
Dracaena cambodiana tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Dracaena cambodiana |
Original size: |
1101 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
613 |
+ |
613 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tagtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aacgaaaaat
101 gggcaatcct gagccaaatc tttattttta gaaaaacaag ggttttcctt
151 ttattttaaa actagaagaa aaagggatag gtgcagagac tcaatggaag
201 ctgttctaac gaatggagtt gactacgttg cgttggtaac tagaatcctt
251 ctaaattaaa agataaatta aggaaaggat gacctatata tctaatacgt
301 acgtatacat actagcagat taatcacgac ctgaattcat tataattata
351 attataatga atttgcaata tatgcaaaat tcaaagttat tgtggatcta
401 tgccaatcaa agttgaagga aaaatcgaat attcagtgat caaatcgttc
451 attccagagt ttgataggcc tttttttttg aaaaattgat taatcggacg
501 agaataaaga gagagtccca ttctacatgt caataccgac aacaaggaaa
551 tttatagtaa gaggaaaatc cgtcgacttt agaaatcgtg agggttcaag
601 tccctctatc ccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.76e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
613 |
594 |
2.76e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.