European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JX047774.1 nt Prostanthera askania voucher Anon. ... 1484 bp Prostanthera askania QL-PLN-00-007 567 bp View
JX047775.1 nt Prostanthera aspalathoides voucher ... 1473 bp Prostanthera aspalathoides QL-PLN-00-007 567 bp View
JX047776.1 nt Prostanthera aff. baxteri TCW-2013 ... 1519 bp Prostanthera aff. baxteri TCW-2013 QL-PLN-00-007 562 bp View
JX047777.1 nt Prostanthera behriana voucher Ainsl... 1500 bp Prostanthera behriana QL-PLN-00-007 572 bp View
JX047778.1 nt Prostanthera caerulea voucher Anon.... 1483 bp Prostanthera caerulea QL-PLN-00-007 567 bp View
JX047779.1 nt Prostanthera calycina voucher Ainsl... 1469 bp Prostanthera calycina QL-PLN-00-007 567 bp View
JX047780.1 nt Prostanthera carrickiana voucher Wi... 1471 bp Prostanthera carrickiana QL-PLN-00-007 567 bp View
JX047781.1 nt Prostanthera chlorantha voucher Cra... 1479 bp Prostanthera chlorantha QL-PLN-00-007 567 bp View
JX047782.1 nt Prostanthera cineolifera voucher Wi... 1484 bp Prostanthera cineolifera QL-PLN-00-007 567 bp View
JX047783.1 nt Prostanthera cruciflora voucher Wil... 1471 bp Prostanthera cruciflora QL-PLN-00-007 567 bp View
JX047784.1 nt Prostanthera cryptandroides voucher... 1486 bp Prostanthera cryptandroides QL-PLN-00-007 567 bp View
JX047787.1 nt Prostanthera densa voucher Wilson 3... 1464 bp Prostanthera densa QL-PLN-00-007 567 bp View
JX047788.1 nt Prostanthera howelliae voucher Wils... 1448 bp Prostanthera howelliae QL-PLN-00-007 561 bp View
JX047789.1 nt Prostanthera discolor voucher Kenne... 1486 bp Prostanthera discolor QL-PLN-00-007 567 bp View
JX047790.1 nt Prostanthera eurybioides voucher Du... 1472 bp Prostanthera eurybioides QL-PLN-00-007 567 bp View
JX047791.1 nt Prostanthera ferricola voucher Meis... 1460 bp Prostanthera ferricola QL-PLN-00-007 567 bp View
JX047792.1 nt Prostanthera florifera voucher J.D.... 1471 bp Prostanthera florifera QL-PLN-00-007 567 bp View
JX047793.1 nt Prostanthera galbraithiae voucher C... 1474 bp Prostanthera galbraithiae QL-PLN-00-007 577 bp View
JX047794.1 nt Prostanthera granitica voucher Wils... 1464 bp Prostanthera granitica QL-PLN-00-007 568 bp View
JX047795.1 nt Prostanthera grylloana voucher Sage... 1471 bp Prostanthera grylloana QL-PLN-00-007 566 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.