Match details
Record ID: |
JX047787.1 |
Database: |
nt |
Go to original record |
Description: |
Prostanthera densa voucher Wilson 37 trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Prostanthera densa |
Original size: |
1464 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
605 |
1171 |
+ |
567 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaacaaa
101 aatgggtaat cctgagccaa atcccgtttt ctcaaaacaa aggtaaaggt
151 tcaaaaaacg aaaaaaggga taggtgcaga gactcaatgg aagctgttct
201 aacaaatgga gttgactgtc ctggtagagg catctttgca tggaaacttc
251 cgaaaggatg aaggataaat gtatctattg aatactatat caaatgatta
301 atgatggtcc gaatctgtat ttgtattttt taatatgaaa aatggaagaa
351 ttggtgtgaa ttgattccac attgaagaaa aaatcgaata ttcagtcagc
401 aaatgattca ctccatagtc cgatagatct tttaaagaat tgattaatcg
451 gacgagaata aagatagagt cccattctac atgtcaatac cggcaacaat
501 gaaatttata gtaagaggaa aatccgtcga ctttaaaaat cgtgagggtt
551 caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
567 |
548 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.