Match details
Record ID: |
JX047794.1 |
Database: |
nt |
Go to original record |
Description: |
Prostanthera granitica voucher Wilson 162 trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Prostanthera granitica |
Original size: |
1464 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
604 |
1171 |
+ |
568 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggtaat cctgagccaa atcccgtttt ctcaaaacaa aggtaaaggt
151 tcaaaaaacg aaaaaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacaaatgg agttgactgc cctgatagag gcatctttgc atggaaactt
251 ccgaaaggat gaaggataaa tgtatctatt gaatactata tcaaatgatt
301 aatgatggtc cgaatctgta tttgtatttt ttaatatgaa aaatggaaga
351 attggtgtga attgattcca cattgaagaa aaaatcgaat attcagtcag
401 caaatgattc actccatagt ccgatagatc ttttaaagaa ctgattaatc
451 ggacgagaat aaagatagag tcccattcta catgtcaata ccggcaacaa
501 tgaaatttat agtaagagga aaatccgtcg actttaaaaa tcgtgagggt
551 tcaagtccct ctatcccc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
568 |
549 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.