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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
FR667098.1 nt Gymnocalycium monvillei subsp. horr... 1051 bp Gymnocalycium monvillei subsp. horridispinum QL-PLN-00-007 606 bp View
FR667100.1 nt Gymnocalycium eurypleurum chloropla... 1208 bp Gymnocalycium eurypleurum QL-PLN-00-007 611 bp View
FR667103.1 nt Gymnocalycium ritterianum var. ritt... 1051 bp Gymnocalycium ritterianum subsp. ritterianum QL-PLN-00-007 606 bp View
FR667109.1 nt Gymnocalycium damsii var. evae chlo... 936 bp Gymnocalycium anisitsii subsp. damsii QL-PLN-00-007 542 bp View
FR667112.1 nt Gymnocalycium chacoense chloroplast... 1211 bp Gymnocalycium chacoense QL-PLN-00-007 620 bp View
FR667125.1 nt Gymnocalycium zegarrae var. riogran... 1211 bp Gymnocalycium zegarrae var. riograndense QL-PLN-00-007 620 bp View
GQ149737.1 nt Solanum crinitum isolate LB2355 trn... 1599 bp Solanum crinitum QL-PLN-00-007 571 bp View
GQ163489.1 nt Solanum beaugleholei trnT-trnL inte... 1725 bp Solanum beaugleholei QL-PLN-00-007 571 bp View
GQ324396.1 nt Cinna latifolia voucher US:Peterson... 1756 bp Cinna latifolia QL-PLN-00-007 613 bp View
GQ324397.2 nt Hookerochloa eriopoda voucher NSW:J... 1806 bp Hookerochloa eriopoda QL-PLN-00-007 620 bp View
GQ324398.1 nt Nicoraepoa pugionifolia voucher US:... 1800 bp Nicoraepoa pugionifolia QL-PLN-00-007 620 bp View
GQ324402.1 nt Poa badensis voucher US:Hajkova 200... 1766 bp Poa badensis QL-PLN-00-007 563 bp View
GQ324404.1 nt Poa bulbosa voucher US:Soreng 5814 ... 1747 bp Poa bulbosa QL-PLN-00-007 563 bp View
GQ324413.1 nt Poa dolosa voucher US:Stoneberg SH1... 1775 bp Poa dolosa QL-PLN-00-007 611 bp View
GQ324414.1 nt Poa dolosa voucher US:Soreng et al.... 1785 bp Poa dolosa QL-PLN-00-007 611 bp View
GQ324418.1 nt Poa laxa subsp. flexuosa voucher CA... 1802 bp Poa laxa subsp. flexuosa QL-PLN-00-007 611 bp View
GQ324421.1 nt Poa glauca voucher CAN:Gillespie 58... 1768 bp Poa glauca QL-PLN-00-007 611 bp View
GQ324427.1 nt Poa infirma voucher UZ Catalan 3-20... 1749 bp Poa infirma QL-PLN-00-007 616 bp View
GQ324431.1 nt Poa lettermanii voucher US:Soreng &... 1801 bp Poa lettermanii QL-PLN-00-007 611 bp View
GQ324433.1 nt Poa lowanensis voucher MEL:Walsh s.... 1812 bp Poa lowanensis QL-PLN-00-007 618 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.