Match details
Record ID: |
GQ324398.1 |
Database: |
nt |
Go to original record |
Description: |
Nicoraepoa pugionifolia voucher US:Peterson et al. 17128 trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Nicoraepoa pugionifolia |
Original size: |
1800 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
847 |
1466 |
+ |
620 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatnaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaagg gggttctcga
151 actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gagttaatta cgttgtgttg ttagtggaat tccttctaaa
251 ttcgagaaag aagggcttta tacatctaat aaacacgtat agatactgac
301 atagcaaacg attaatccca gaacctatat tataatatat ggttctttat
351 tcttttttag aatgaaattt gaaatagaaa tgattatgaa ataaaaaatt
401 cagaattttt tttagaatta ttgtgaatcc attccaatcg aatatttagt
451 aatcaaatcc ttcaattcaa agttttgagg tctttaaaaa agtggattaa
501 tcggacgagg acaaagagag agtcccattc tacatgtcaa tactgacaac
551 aatgaaattt ctagtaaaag gaaaatccgt cgactttata agtcgtgagg
601 gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.79e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
620 |
601 |
2.79e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.