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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU828183.1 nt Agalinis plukenetii isolate 2FL tRN... 1663 bp Agalinis plukenetii QL-PLN-00-007 569 bp View
EU828184.1 nt Agalinis plukenetii isolate 4GA tRN... 1229 bp Agalinis plukenetii QL-PLN-00-007 569 bp View
EU828185.1 nt Agalinis pulchella isolate 3GA tRNA... 1629 bp Agalinis pulchella QL-PLN-00-007 546 bp View
EU828186.1 nt Agalinis pulchella isolate 4FL tRNA... 1616 bp Agalinis pulchella QL-PLN-00-007 546 bp View
EU828187.1 nt Agalinis purpurea isolate 101VA tRN... 1614 bp Agalinis purpurea QL-PLN-00-007 540 bp View
EU828188.1 nt Agalinis purpurea isolate 1AL tRNA-... 1635 bp Agalinis purpurea QL-PLN-00-007 540 bp View
EU828189.1 nt Agalinis purpurea isolate 64MD tRNA... 1642 bp Agalinis purpurea QL-PLN-00-007 539 bp View
EU828190.1 nt Agalinis purpurea isolate 6SC tRNA-... 1618 bp Agalinis purpurea QL-PLN-00-007 539 bp View
EU828191.1 nt Agalinis setacea isolate 3VA tRNA-T... 1656 bp Agalinis setacea QL-PLN-00-007 552 bp View
EU828192.1 nt Agalinis setacea isolate 7MD tRNA-T... 1669 bp Agalinis setacea QL-PLN-00-007 551 bp View
EU828193.1 nt Agalinis skinneriana isolate 106MD ... 1661 bp Agalinis skinneriana QL-PLN-00-007 553 bp View
EU828194.1 nt Agalinis skinneriana isolate 78MD t... 1639 bp Agalinis skinneriana QL-PLN-00-007 553 bp View
EU828195.1 nt Agalinis skinneriana isolate 90MO t... 1636 bp Agalinis skinneriana QL-PLN-00-007 553 bp View
EU828196.1 nt Agalinis strictifolia isolate 4 tRN... 1636 bp Agalinis strictifolia QL-PLN-00-007 553 bp View
EU828197.1 nt Agalinis tenella isolate 11GA tRNA-... 1647 bp Agalinis tenella QL-PLN-00-007 552 bp View
EU828198.1 nt Agalinis tenella isolate 13GA tRNA-... 1651 bp Agalinis tenella QL-PLN-00-007 552 bp View
EU828199.1 nt Agalinis tenella isolate 3SC tRNA-T... 1650 bp Agalinis tenella QL-PLN-00-007 552 bp View
EU828200.1 nt Agalinis tenella isolate 4GA tRNA-T... 1645 bp Agalinis tenella QL-PLN-00-007 552 bp View
EU828201.1 nt Agalinis tenella isolate 9GA tRNA-T... 1664 bp Agalinis tenella QL-PLN-00-007 552 bp View
EU828202.1 nt Agalinis tenuifolia isolate 10LA tR... 1503 bp Agalinis tenuifolia QL-PLN-00-007 553 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.