Match details
Record ID: |
EU828191.1 |
Database: |
nt |
Go to original record |
Description: |
Agalinis setacea isolate 3VA tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Agalinis setacea |
Original size: |
1656 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
728 |
1279 |
+ |
552 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaagaaa
101 aaagggcaat cctgagccaa atcctgtttt cttaaaacaa aagttcagaa
151 aacgaaaaaa aggataggtg cagagactca atggaagctg ttctaacaaa
201 tggagttgat tgcgctgata gaggaatgaa acttcagaaa ggatgaagga
251 taaacgtatc tattgaatag atatcaaaat caaatgattg attaatgatg
301 gccccaatct ctatctgtat ttttgaatac gaaaagtgga agaattggtg
351 tgaatttctt ccataaagaa tattcattca tcaaatcatt cactccatag
401 tccgatagat ctttttaaaa agatctgatt aatcggacga gaataaagat
451 agagtcccat tctacatgtc aatactggca acaatgaaat ttatagtaaa
501 aggaaaatcc gtcgactttt aaaatcgtga gggttcaagt ccctctatcc
551 cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.48e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
552 |
533 |
2.48e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.