Match details
Record ID: |
EU828184.1 |
Database: |
nt |
Go to original record |
Description: |
Agalinis plukenetii isolate 4GA tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Agalinis plukenetii |
Original size: |
1229 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
273 |
841 |
+ |
569 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaagaaa
101 aaagggcaat cctgagccaa atcctgtttt cttaaaacaa aagttcagaa
151 aacgaaaaaa ggataggtgc agagactcaa tggaagctgt tctaacaaat
201 ggagttgatt gcgctgatag aggaatgaaa cttcgataga ggaatgaaac
251 ttcagaaagg atgaaggcta aacgtatcta ttgactagat atcaaaatca
301 aatgattgat taatgatggc cccaatctct atctgtattt ttgaatacga
351 aagtggaaga attggtgtga atttcttcca taaagaatat tcattcatca
401 aatcattcac tccatagtcc gatagatctt tttaaacaga tctgattaat
451 cggacgagaa taaagataga gtcccattct acatgtcaat actggcaaca
501 atgaaattta tagtaaaagg aaaatccgtc gacttttaaa atcgtgaggg
551 ttcaagtccc tctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
569 |
550 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.