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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EF395425.1 nt Tsuga chinensis voucher YU Havill 0... 1474 bp Tsuga chinensis QL-PLN-00-007 572 bp View
EF395426.1 nt Tsuga chinensis voucher YU Havill 0... 1474 bp Tsuga chinensis QL-PLN-00-007 572 bp View
EF395428.1 nt Tsuga chinensis voucher A 100-94 tR... 1474 bp Tsuga chinensis QL-PLN-00-007 572 bp View
EF395432.1 nt Tsuga chinensis voucher YU Havill 0... 1459 bp Tsuga chinensis QL-PLN-00-007 557 bp View
EF395433.1 nt Tsuga chinensis voucher HAST 17352 ... 1478 bp Tsuga chinensis QL-PLN-00-007 557 bp View
EF395434.1 nt Tsuga diversifolia voucher YU Havil... 1470 bp Tsuga diversifolia QL-PLN-00-007 561 bp View
EF395436.1 nt Tsuga diversifolia voucher A 1837-7... 1470 bp Tsuga diversifolia QL-PLN-00-007 561 bp View
EF395437.1 nt Tsuga dumosa voucher YU Havill 02-5... 1306 bp Tsuga dumosa QL-PLN-00-007 557 bp View
EF395441.1 nt Tsuga forrestii voucher YU Havill 0... 1474 bp Tsuga forrestii QL-PLN-00-007 572 bp View
EF395442.1 nt Tsuga forrestii voucher YU Havill 0... 1474 bp Tsuga forrestii QL-PLN-00-007 572 bp View
EF395443.1 nt Tsuga forrestii voucher USNA 70161 ... 1473 bp Tsuga forrestii QL-PLN-00-007 572 bp View
EF395444.1 nt Tsuga heterophylla voucher YU Havil... 1455 bp Tsuga heterophylla QL-PLN-00-007 556 bp View
EF395446.1 nt Tsuga mertensiana voucher YU Havill... 1458 bp Tsuga mertensiana QL-PLN-00-007 556 bp View
EF395448.1 nt Tsuga sieboldii voucher YU Havill 0... 1459 bp Tsuga sieboldii QL-PLN-00-007 557 bp View
EF395451.1 nt Tsuga sieboldii voucher YU Havill 0... 1448 bp Tsuga sieboldii QL-PLN-00-007 556 bp View
EF440530.1 nt Picea abies from Romania tRNA-Thr (... 1434 bp Picea abies QL-PLN-00-007 562 bp View
EF440531.1 nt Picea abies from Poland tRNA-Thr (t... 1434 bp Picea abies QL-PLN-00-007 562 bp View
EF440532.1 nt Picea alcoquiana from Japan tRNA-Th... 1434 bp Picea alcoquiana QL-PLN-00-007 562 bp View
EF440533.1 nt Picea asperata from China tRNA-Thr ... 1434 bp Picea asperata QL-PLN-00-007 562 bp View
EF440534.1 nt Picea brachytyla from China tRNA-Th... 1453 bp Picea brachytyla QL-PLN-00-007 562 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.