Match details
Record ID: |
EF395432.1 |
Database: |
nt |
Go to original record |
Description: |
Tsuga chinensis voucher YU Havill 04-85 tRNA-Leu (trnL) gene, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Tsuga chinensis |
Original size: |
1459 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
475 |
1031 |
+ |
557 bp |
|
1 cgaaatcggt agacgctacg gacttgatcg aattgagcct tggtatggaa
51 acctaccaag tgatagcttc caaattcagg gaaccccggg atattttgaa
101 tgggtaatcc tgagccaaat ccggttcata gagacaatgg tttctttcct
151 aggataggaa ggggataggt gcagagactc aatggaagct attctaacga
201 atgaatttca tttggggtcc aatactctat ttatagaacg ctttatttac
251 acctcgaaag tgggaatgtt gtataaaaaa aaacaacact cgcgatcaga
301 acttgaatcg tttcaagcat tttatttgta aaagaaatgc cagatttgag
351 ttgaagtaat gatttgacat taagtaatcc aattatgaac tttctctact
401 ctagataggg agttgaatca gtttttggaa gaaattattg gacgaggata
451 aagatagagt ccaattctac gtgtcaatgt caacaacaat gcaaattgca
501 gtaggaggaa aatccgttgg ctttatagac cgtgagggtt caagtccctc
551 tatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.51e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
557 |
538 |
2.51e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.