Match details
Record ID: |
EF395444.1 |
Database: |
nt |
Go to original record |
Description: |
Tsuga heterophylla voucher YU Havill 03-03 tRNA-Leu (trnL) gene, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Tsuga heterophylla |
Original size: |
1455 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
475 |
1030 |
+ |
556 bp |
|
1 cgaaatcggt agacgctacg gacttgatcg aattgagcct tggtatggaa
51 acctaccaag tgatagcttc caaattcagg gaaccccggg atattttgaa
101 tgggtaatcc tgagccaaat ccggttcata gagacaatgg tttctttcct
151 aggataggaa ggggataggt gcagagactc aatggaagct attctaacga
201 atgaatttca tttggagtcc aatactctat ttatagaacg ctttatttac
251 acctcgaaag tgggaatgtt gtataaaata aaacaacact cgcgatcaga
301 acttcaatcg ttccaagcat tttatttgta agagaaatgc cagattttag
351 ttgaagtaat gatttgacat taagtaatcc aattatgaac ttctctactc
401 tagataggga gttgaatcag tttttggaat aaatgattgg acgaggataa
451 agatagagtc caattctacg tgtcaatgtc aacaacaatg caaattgcag
501 taggaggaaa atccgttggc tttatagacc gtgagggttc aagtccctct
551 atcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.50e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
556 |
537 |
2.50e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.