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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DQ353993.1 nt Poa hartzii subsp. hartzii voucher ... 1818 bp Poa hartzii subsp. hartzii QL-PLN-00-007 611 bp View
DQ353994.1 nt Poa curtifolia voucher Soreng & Sor... 1822 bp Poa curtifolia QL-PLN-00-007 611 bp View
DQ353995.1 nt Poa laxa subsp. fernaldiana voucher... 1820 bp Poa laxa subsp. fernaldiana QL-PLN-00-007 611 bp View
DQ353996.1 nt Poa abbreviata voucher Gillespie & ... 1825 bp Poa abbreviata QL-PLN-00-007 611 bp View
DQ353997.1 nt Poa pseudoabbreviata voucher Soreng... 1828 bp Poa pseudoabbreviata QL-PLN-00-007 611 bp View
DQ353998.1 nt Poa leptocoma voucher Soreng & Sore... 1770 bp Poa leptocoma QL-PLN-00-007 611 bp View
DQ353999.1 nt Poa leptocoma voucher Soreng & Sore... 1784 bp Poa leptocoma QL-PLN-00-007 611 bp View
DQ354000.1 nt Poa palustris voucher Gillespie 646... 1847 bp Poa palustris QL-PLN-00-007 610 bp View
DQ354001.1 nt Poa margilicola trnT-trnL intergeni... 1820 bp Poa margilicola QL-PLN-00-007 608 bp View
DQ354002.1 nt Poa interior voucher Soreng & Soren... 1805 bp Poa interior QL-PLN-00-007 611 bp View
DQ354003.1 nt Poa compressa voucher Gillespie 645... 1853 bp Poa compressa QL-PLN-00-007 611 bp View
DQ354004.1 nt Poa glauca voucher Gillespie & Chat... 1826 bp Poa glauca QL-PLN-00-007 611 bp View
DQ354020.1 nt Poa atropidiformis voucher Soreng &... 1818 bp Poa atropidiformis QL-PLN-00-007 618 bp View
DQ354023.1 nt Poa acinaciphylla voucher Soreng & ... 1873 bp Poa acinaciphylla QL-PLN-00-007 618 bp View
DQ354057.1 nt Poa stenantha trnT-trnL intergenic ... 1815 bp Poa stenantha QL-PLN-00-007 611 bp View
DQ354058.1 nt Arctophila fulva trnT-trnL intergen... 1717 bp Arctophila fulva QL-PLN-00-007 613 bp View
DQ417596.1 nt Asarum nipponicum tRNA-Leu (trnL) g... 1006 bp Asarum nipponicum QL-PLN-00-007 598 bp View
DQ417597.1 nt Asarum tamaensis tRNA-Leu (trnL) ge... 1012 bp Asarum tamaense QL-PLN-00-007 596 bp View
DQ417936.1 nt Cariniana domestica voucher Solomon... 997 bp Cariniana domestica QL-PLN-00-007 567 bp View
DQ417955.1 nt Eschweilera amazoniciformis voucher... 991 bp Eschweilera amazoniciformis QL-PLN-00-007 593 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.