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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OX459125.1 nt Oldenlandia corymbosa var. corymbos... 25533221 bp Oldenlandia corymbosa var. corymbosa QL-PLN-00-007 583 bp View
OX459127.1 nt Oldenlandia corymbosa var. corymbos... 152414 bp Oldenlandia corymbosa var. corymbosa QL-PLN-00-007 583 bp View
OX485189.1 nt Oryza meyeriana genome assembly, or... 135917 bp Oryza meyeriana QL-PLN-00-007 615 bp View
OX596242.1 nt Salicornia ramosissima genome assem... 153299 bp Salicornia ramosissima QL-PLN-00-007 596 bp View
OX637246.1 nt Oryza sativa genome assembly, chrom... 51113606 bp Oryza sativa QL-PLN-00-007 615 bp View
OX637255.1 nt Oryza sativa genome assembly, chrom... 19643871 bp Oryza sativa QL-PLN-00-007 615 bp View
OX637255.1 nt Oryza sativa genome assembly, chrom... 19643871 bp Oryza sativa QL-PLN-00-007 615 bp View
OX637255.1 nt Oryza sativa genome assembly, chrom... 19643871 bp Oryza sativa QL-PLN-00-007 615 bp View
OX637257.1 nt Oryza sativa genome assembly, chrom... 28993288 bp Oryza sativa QL-PLN-00-007 615 bp View
OX940726.1 nt Scutellaria minor genome assembly, ... 36386000 bp Scutellaria minor QL-PLN-00-007 557 bp View
OX940740.1 nt Scutellaria minor genome assembly, ... 152587 bp Scutellaria minor QL-PLN-00-007 558 bp View
OX940973.1 nt Euphrasia confusa genome assembly, ... 144975 bp Euphrasia confusa QL-PLN-00-007 535 bp View
OY282497.1 nt Ajuga chamaepitys genome assembly, ... 70427289 bp Ajuga chamaepitys QL-PLN-00-007 555 bp View
OY282497.1 nt Ajuga chamaepitys genome assembly, ... 70427289 bp Ajuga chamaepitys QL-PLN-00-007 555 bp View
OY282497.1 nt Ajuga chamaepitys genome assembly, ... 70427289 bp Ajuga chamaepitys QL-PLN-00-007 555 bp View
OY282497.1 nt Ajuga chamaepitys genome assembly, ... 70427289 bp Ajuga chamaepitys QL-PLN-00-007 555 bp View
OY282505.1 nt Ajuga chamaepitys genome assembly, ... 57420611 bp Ajuga chamaepitys QL-PLN-00-007 555 bp View
OY282505.1 nt Ajuga chamaepitys genome assembly, ... 57420611 bp Ajuga chamaepitys QL-PLN-00-007 555 bp View
OY282506.1 nt Ajuga chamaepitys genome assembly, ... 57120494 bp Ajuga chamaepitys QL-PLN-00-007 555 bp View
OY282506.1 nt Ajuga chamaepitys genome assembly, ... 57120494 bp Ajuga chamaepitys QL-PLN-00-007 555 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.