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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
CP132246.1 nt Oryza sativa Japonica Group cultiva... 28271460 bp Oryza sativa Japonica Group QL-PLN-00-007 614 bp View
CP137827.1 nt Sorghum bicolor cultivar Hongyingzi... 80770984 bp Sorghum bicolor QL-PLN-00-007 523 bp View
CP137837.1 nt Sorghum bicolor cultivar Huandiaonu... 81178864 bp Sorghum bicolor QL-PLN-00-007 523 bp View
CP141108.1 nt Oryza sativa indica subgroup cultiv... 27528433 bp Oryza sativa indica subgroup QL-PLN-00-007 615 bp View
DQ018178.1 nt Cremastosperma oblongum tRNA-Leu (t... 963 bp Cremastosperma oblongum QL-PLN-00-007 576 bp View
DQ018179.1 nt Cremastosperma yamayakatense tRNA-L... 963 bp Cremastosperma yamayakatense QL-PLN-00-007 576 bp View
DQ018181.1 nt Cremastosperma pedunculatum tRNA-Le... 963 bp Cremastosperma pedunculatum QL-PLN-00-007 576 bp View
DQ018182.1 nt Cremastosperma sp. Smith 1577 tRNA-... 963 bp Cremastosperma sp. Smith 1577 QL-PLN-00-007 576 bp View
DQ018183.1 nt Cremastosperma sp. Foster 3418 tRNA... 963 bp Cremastosperma sp. Foster 3418 QL-PLN-00-007 576 bp View
DQ018184.1 nt Cremastosperma westrae tRNA-Leu (tr... 964 bp Cremastosperma westrae QL-PLN-00-007 577 bp View
DQ131547.1 nt Glycine max tRNA-Leu (trnL) gene, p... 584 bp Glycine max QL-PLN-00-007 584 bp View
DQ131549.1 nt Solanum tuberosum tRNA-Leu (trnL) g... 571 bp Solanum tuberosum QL-PLN-00-007 571 bp View
DQ131551.1 nt Zea mays tRNA-Leu (trnL) gene, part... 532 bp Zea mays QL-PLN-00-007 532 bp View
DQ131552.1 nt Oryza sativa tRNA-Leu (trnL) gene, ... 615 bp Oryza sativa QL-PLN-00-007 615 bp View
DQ131553.1 nt Oryza punctata tRNA-Leu (trnL) gene... 615 bp Oryza punctata QL-PLN-00-007 615 bp View
DQ131556.1 nt Anacardium occidentale tRNA-Leu (tr... 530 bp Anacardium occidentale QL-PLN-00-007 530 bp View
DQ131559.1 nt Lycopersicon esculentum tRNA-Leu (t... 571 bp Solanum lycopersicum QL-PLN-00-007 571 bp View
DQ180417.1 nt Lycianthes rantonnei isolate RGO 36... 1930 bp Lycianthes rantonnei QL-PLN-00-007 574 bp View
DQ208857.1 nt Caesalpinia oyamae isolate VTN1 tRN... 1042 bp Erythrostemon oyamae QL-PLN-00-007 592 bp View
DQ208873.1 nt Caesalpinia oyamae isolate TEH4 tRN... 1070 bp Erythrostemon oyamae QL-PLN-00-007 589 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.