Match details
Record ID: |
DQ018184.1 |
Database: |
nt |
Go to original record |
Description: |
Cremastosperma westrae tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Cremastosperma westrae |
Original size: |
964 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
577 |
+ |
577 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51 acctactaag tgagaacttc caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctgtgttcag aaaacaaggt tcagaaagcg
151 agaatcaata acagaaaaag gataggtgca gagactcaac ggaagctgtt
201 ctaacaaata gagttgactg cattggtagg ggaattcttt ccttctaccc
251 aaacgacaga aaggatgacc ttgtatacgt acgtatacat actgaaacat
301 caaacgatta atcacgactc gaatcagtat tttttttata tgaaaaattt
351 cagaatagaa ggattgtgaa ttgattccga gttgaaggaa gaatcgaata
401 ttcagagatc aaatcattca ttcccgagtc taatagatct tttgaagaac
451 tgattaatcg gacgagaata aagatagagt cccattctac atgtcaatac
501 agacaacaat gaaatttata gtaagaggaa aatccgtcga ctttcaaaat
551 cgtgagggtt caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.60e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
577 |
558 |
2.60e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.