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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OR743518.1 nt Eremophila canaliculata isolate BMR... 151658 bp Eremophila canaliculata QL-PLN-00-007 557 bp View
OR743519.1 nt Eremophila canaliculata isolate BMR... 151662 bp Eremophila canaliculata QL-PLN-00-007 557 bp View
OR743520.1 nt Eremophila sp. (in: birds) isolate ... 151762 bp Eremophila sp. (in: birds) QL-PLN-00-007 567 bp View
OR743521.1 nt Eremophila canaliculata isolate BMR... 151645 bp Eremophila canaliculata QL-PLN-00-007 557 bp View
OR743522.1 nt Eremophila sp. (in: birds) isolate ... 151738 bp Eremophila sp. (in: birds) QL-PLN-00-007 567 bp View
OR743523.1 nt Eremophila canaliculata isolate BMR... 151646 bp Eremophila canaliculata QL-PLN-00-007 558 bp View
OR743524.1 nt Eremophila fraseri subsp. fraseri i... 151776 bp Eremophila fraseri subsp. fraseri QL-PLN-00-007 568 bp View
OR743525.1 nt Eremophila canaliculata isolate BMR... 151637 bp Eremophila canaliculata QL-PLN-00-007 557 bp View
OR743526.1 nt Eremophila latrobei subsp. latrobei... 151601 bp Eremophila latrobei subsp. latrobei QL-PLN-00-007 557 bp View
OR743527.1 nt Eremophila sp. (in: birds) isolate ... 151730 bp Eremophila sp. (in: birds) QL-PLN-00-007 567 bp View
OR743528.1 nt Eremophila fraseri subsp. fraseri i... 151796 bp Eremophila fraseri subsp. fraseri QL-PLN-00-007 568 bp View
OR753215.1 nt Cornus controversa chloroplast, com... 158665 bp Cornus controversa QL-PLN-00-007 595 bp View
OR778394.1 nt Damrongia clarkeana chloroplast, co... 153142 bp Damrongia clarkeana QL-PLN-00-007 554 bp View
OR790650.1 nt Orthosiphon aristatus var. aristatu... 152170 bp Orthosiphon aristatus var. aristatus QL-PLN-00-007 546 bp View
OR791522.1 nt Tripsacum dactyloides tRNA-Leu (trn... 533 bp Tripsacum dactyloides QL-PLN-00-007 532 bp View
OR791523.1 nt Zea mays cultivar 573MB tRNA-Leu (t... 533 bp Zea mays QL-PLN-00-007 532 bp View
OR791528.1 nt Zea mays cultivar 611CB tRNA-Leu (t... 533 bp Zea mays QL-PLN-00-007 532 bp View
OR822600.1 nt Phlomoides rotata chloroplast, comp... 151837 bp Phlomoides rotata QL-PLN-00-007 560 bp View
OR822601.1 nt Paraphlomis javanica chloroplast, c... 152227 bp Paraphlomis javanica QL-PLN-00-007 563 bp View
OR822602.1 nt Phlomoides megalantha chloroplast, ... 151519 bp Phlomoides megalantha QL-PLN-00-007 555 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.