Match details
Record ID: |
OR743526.1 |
Database: |
nt |
Go to original record |
Description: |
Eremophila latrobei subsp. latrobei isolate BMR07500 chloroplast, complete genome. |
Taxon: |
Eremophila latrobei subsp. latrobei |
Original size: |
151601 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48154 |
48710 |
+ |
557 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 agcgaaaaaa aaaaggatag gtgcagagac tcaatggaag ctgttctaac
201 aaatggagtt gactgcgttg gtagaggaat ctttccatcg aaacttcaga
251 aaggataaag gtatatattg aatactatct caaatgatta atgatggccc
301 taatctgtat ctgtattttt ttatatgaaa aatggaagaa ttggtatgaa
351 gtgattccac attgaagaaa gaatcaaata ttccttcatc aaatcattca
401 ctccacagtc tgatagttct tttaaagaac tgattaatcg gacaagaata
451 aagatagagt cccattctac atgtcaatat tggcaacaat gcaatttata
501 gtaagaggaa aatccgtcga ctttaaaagt cgtgagggtt caagtccctc
551 tatcccc
View other 28 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.51e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
557 |
538 |
2.51e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.