Match details
Record ID: |
OR790650.1 |
Database: |
nt |
Go to original record |
Description: |
Orthosiphon aristatus var. aristatus isolate RauMeo01-NTT22 chloroplast, complete genome. |
Taxon: |
Orthosiphon aristatus var. aristatus |
Original size: |
152170 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46938 |
47483 |
+ |
546 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcaaaa
151 aacgaaaaaa aggataggtg cagagactca atggaagctg ttctaacaaa
201 tgggagttga ctgcgctggt agaggaatct ttccatggaa actttagaaa
251 ggatgaagga taaacgcatc tattgaatct atatcaaatg gttaatgatg
301 gcccgaatct tttaatatga aaaaatggaa aaattggtgt gaattgattc
351 tacgttgaag aaaaaatcga atattcatca actcattcgc tccatagtcc
401 gatagatctt ttaaagaact gattaatcgg acgagaataa agatagagtc
451 ccattctaca tgtcaatatc ggcaacaatg aaatttatag taagaggaaa
501 atccgtcgac tttaaaaatc gtgagggttc aagtccctct atcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.46e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
546 |
527 |
2.46e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.