Match details
Record ID: |
OR791528.1 |
Database: |
nt |
Go to original record |
Description: |
Zea mays cultivar 611CB tRNA-Leu (trnL-UAA) gene, partial sequence; chloroplast. |
Taxon: |
Zea mays |
Original size: |
533 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
532 |
+ |
532 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaacaagtg gttctcaaac
151 tagaacccaa aggaaaagga taggtgcaga gactcaatgg aagctgttct
201 aacgaatcga agtaataacg attaatcaca gaacccatat tataatatag
251 gttctttatt ttatttttag aatgaaatta ggaatgatta tgaaatagaa
301 aattcataat ttttttttag aattattgtg aatctattcc aatcaaatat
351 tgagtaatca aatccttcaa ttcattgttt tcgagatctt ttaattttaa
401 aaagtggatt aatcggacga ggataaagag agagtcccat tctacatgtc
451 aatactgaca acaatgaaat ttctagtaaa aggaaaatcc gtcgacttta
501 taagtcgtga gggttcaagt ccctctatcc cc
View other 10 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.39e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
532 |
513 |
2.39e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.