Match details
Record ID: |
OR743524.1 |
Database: |
nt |
Go to original record |
Description: |
Eremophila fraseri subsp. fraseri isolate BMR07489 chloroplast, complete genome. |
Taxon: |
Eremophila fraseri subsp. fraseri |
Original size: |
151776 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48232 |
48799 |
+ |
568 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 agcgaaaaaa aaaaggatag gtgcagagac tcaatggaag ctgttctaac
201 aaatggagtt gactgcgttg gtagaggaat ctttccatcg aaacttcaga
251 aagaaaggat gaaggataaa ggtatatatt gaatactata tcaaatgatt
301 aatgatggcc ctaatctgta tctgtatttt tttatatgaa aaatggaaga
351 attggtatga agtgattcca cattgaagaa agaatcaaat attccttcat
401 caaatcattc actccacagt ctgatagttc ttttaaagaa ctgattaatc
451 ggacaagaat aaagatagag tcccattcta catgtcaata ttggcaacaa
501 tgcaatttat agtaagagga aaatccgtcg acttttaaag tcgtgagggt
551 tcaagtccct ctatcccc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
568 |
549 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.