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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
ON641275.1 nt Mentha pulegium isolate BPTPS136 vo... 152281 bp Mentha pulegium QL-PLN-00-007 566 bp View
ON641276.1 nt Lavandula angustifolia isolate BPTP... 151479 bp Lavandula angustifolia QL-PLN-00-007 563 bp View
ON641278.1 nt Mentha spicata isolate BPTPS163 vou... 152048 bp Mentha spicata QL-PLN-00-007 572 bp View
ON641279.1 nt Mentha spicata isolate BPTPS193 vou... 152048 bp Mentha spicata QL-PLN-00-007 572 bp View
ON641292.1 nt Origanum vulgare subsp. virens isol... 151826 bp Origanum vulgare subsp. virens QL-PLN-00-007 544 bp View
ON641295.1 nt Helichrysum italicum subsp. picardi... 152407 bp Helichrysum italicum subsp. picardii QL-PLN-00-007 521 bp View
ON641301.1 nt Plantago lagopus isolate BPTPS040 v... 150210 bp Plantago lagopus QL-PLN-00-007 582 bp View
ON641306.1 nt Helichrysum italicum subsp. picardi... 152415 bp Helichrysum italicum subsp. picardii QL-PLN-00-007 521 bp View
ON641323.1 nt Origanum vulgare subsp. vulgare iso... 151830 bp Origanum vulgare subsp. vulgare QL-PLN-00-007 544 bp View
ON641324.1 nt Salvia officinalis isolate BPTPS083... 151163 bp Salvia officinalis QL-PLN-00-007 561 bp View
ON641329.1 nt Taraxacum officinale isolate BPTPS0... 151323 bp Taraxacum officinale QL-PLN-00-007 527 bp View
ON641355.1 nt Salvia officinalis isolate BPTPS146... 151163 bp Salvia officinalis QL-PLN-00-007 561 bp View
ON641356.1 nt Aloysia citrodora isolate BPTPS151 ... 155230 bp Aloysia citrodora QL-PLN-00-007 562 bp View
ON641358.1 nt Origanum vulgare subsp. vulgare iso... 151798 bp Origanum vulgare subsp. vulgare QL-PLN-00-007 544 bp View
ON641359.1 nt Helichrysum italicum subsp. picardi... 152112 bp Helichrysum italicum subsp. picardii QL-PLN-00-007 552 bp View
ON641360.1 nt Helichrysum italicum subsp. picardi... 152479 bp Helichrysum italicum subsp. picardii QL-PLN-00-007 521 bp View
ON641361.1 nt Ocimum basilicum isolate BPTPS161 v... 152407 bp Ocimum basilicum QL-PLN-00-007 549 bp View
ON641364.1 nt Salvia officinalis isolate BPTPS165... 151164 bp Salvia officinalis QL-PLN-00-007 561 bp View
ON641368.1 nt Aloysia citrodora isolate BPTPS172 ... 155230 bp Aloysia citrodora QL-PLN-00-007 562 bp View
ON641369.1 nt Satureja montana isolate BPTPS174 v... 151882 bp Satureja montana QL-PLN-00-007 563 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.