Match details
Record ID: |
ON641358.1 |
Database: |
nt |
Go to original record |
Description: |
Origanum vulgare subsp. vulgare isolate BPTPS156 voucher LISE:96467 chloroplast, complete genome. |
Taxon: |
Origanum vulgare subsp. vulgare |
Original size: |
151798 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46858 |
47401 |
+ |
544 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggataggtg
151 cagagactca atggaagctg ttctaacaaa tggagttgac tgcgtcggta
201 gaggaatctt tccatggaaa ctttctaaag gatgaaagat aaacgcatct
251 attgaatact atatcaaatg attaatgttg gcccgaatct atttttttaa
301 tatgaaaatg aaaaaatgga aaaatcggtg tgaatttatt tcacgttgaa
351 taaaaaatag aatattcatc aacttattaa ctccatagtc cgatagatct
401 tttaaagaac tttttaatcg gacgagaata aagatagagt cccattctac
451 atgctacata tcaataccgg caacaatgaa atttatagta agaggaaaat
501 ccgtcgactt taaaaatcgt gagggttcaa gtccctctat cccc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.45e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
544 |
525 |
2.45e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.