JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

544 bp

1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acttactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggataggtg
151   cagagactca atggaagctg ttctaacaaa tggagttgac tgcgtcggta
201   gaggaatctt tccatggaaa ctttctaaag gatgaaagat aaacgcatct
251   attgaatact atatcaaatg attaatgttg gcccgaatct atttttttaa
301   tatgaaaatg aaaaaatgga aaaatcggtg tgaatttatt tcacgttgaa
351   taaaaaatag aatattcatc aacttattaa ctccatagtc cgatagatct
401   tttaaagaac tttttaatcg gacgagaata aagatagagt cccattctac
451   atgctacata tcaataccgg caacaatgaa atttatagta agaggaaaat
501   ccgtcgactt taaaaatcgt gagggttcaa gtccctctat cccc

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
JX880022.1	nt	Origanum vulgare subsp. vulgare chl...	151935 bp	Origanum vulgare subsp. vulgare	QL-PLN-00-007	544 bp	View
ON641323.1	nt	Origanum vulgare subsp. vulgare iso...	151830 bp	Origanum vulgare subsp. vulgare	QL-PLN-00-007	544 bp	View
ON641358.1	nt	Origanum vulgare subsp. vulgare iso...	151798 bp	Origanum vulgare subsp. vulgare	QL-PLN-00-007	544 bp	View
ON641374.1	nt	Origanum vulgare subsp. vulgare iso...	151814 bp	Origanum vulgare subsp. vulgare	QL-PLN-00-007	544 bp	View
ON641383.1	nt	Origanum vulgare subsp. vulgare iso...	151813 bp	Origanum vulgare subsp. vulgare	QL-PLN-00-007	544 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.