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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OM174288.1 nt Papaver nudicaule chloroplast, comp... 153914 bp Papaver nudicaule QL-PLN-00-007 596 bp View
OM174290.1 nt Papaver radicatum subsp. dahlianum ... 153747 bp Papaver radicatum subsp. dahlianum QL-PLN-00-007 596 bp View
OM174291.1 nt Papaver radicatum subsp. laestadian... 153767 bp Papaver radicatum subsp. laestadianum QL-PLN-00-007 596 bp View
OM174292.1 nt Papaver radicatum subsp. macrostigm... 153767 bp Papaver radicatum subsp. macrostigmum QL-PLN-00-007 596 bp View
OM174293.1 nt Papaver rhoeas chloroplast, complet... 152948 bp Papaver rhoeas QL-PLN-00-007 602 bp View
OM174294.1 nt Papaver somniferum subsp. setigerum... 152862 bp Papaver somniferum subsp. setigerum QL-PLN-00-007 591 bp View
OM174295.1 nt Papaver somniferum isolate TROM_V_1... 152884 bp Papaver somniferum QL-PLN-00-007 591 bp View
OM174296.1 nt Papaver somniferum isolate HN1 chlo... 152957 bp Papaver somniferum QL-PLN-00-007 591 bp View
OM176664.1 nt Actinostephanus enpingensis chlorop... 154338 bp Actinostephanus enpingensis QL-PLN-00-007 544 bp View
OM176665.1 nt Actinostephanus enpingensis chlorop... 154315 bp Actinostephanus enpingensis QL-PLN-00-007 544 bp View
OM176669.1 nt Boeica sp. LF-2023a chloroplast, co... 154178 bp Boeica sp. LF-2023a QL-PLN-00-007 544 bp View
OM177223.1 nt Dendrocalamus farinosus chloroplast... 139499 bp Dendrocalamus farinosus QL-PLN-00-007 613 bp View
OM257167.1 nt Physalis angulata var. villosa chlo... 156898 bp Physalis angulata var. villosa QL-PLN-00-007 571 bp View
OM317760.1 nt Zea mays cultivar sweet maize chlor... 140538 bp Zea mays QL-PLN-00-007 532 bp View
OM317761.1 nt Zea mays cultivar waxy maize chloro... 140454 bp Zea mays QL-PLN-00-007 532 bp View
OM397372.1 nt Scutellaria grandiflora chloroplast... 151690 bp Scutellaria grandiflora QL-PLN-00-007 565 bp View
OM403707.1 nt Phytolacca americana chloroplast, c... 155082 bp Phytolacca americana QL-PLN-00-007 617 bp View
OM403708.1 nt Phytolacca americana chloroplast, c... 155092 bp Phytolacca americana QL-PLN-00-007 617 bp View
OM403709.1 nt Phytolacca americana chloroplast, c... 155092 bp Phytolacca americana QL-PLN-00-007 617 bp View
OM403710.1 nt Phytolacca americana chloroplast, c... 155092 bp Phytolacca americana QL-PLN-00-007 617 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.