Match details
Record ID: |
OM403708.1 |
Database: |
nt |
Go to original record |
Description: |
Phytolacca americana chloroplast, complete genome. |
Taxon: |
Phytolacca americana |
Original size: |
155092 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47966 |
48582 |
+ |
617 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gtttgagcct tagtatggaa
51 acctactaag tgaaaatttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa ctcctttttt caaaagaaaa aaataagggt
151 tcagaaagca agaaaaaaag gataggtgca gagactcaaa ggaagctgtt
201 ctaacaaatg gggttgactg tgctgtgttg ttataaaaat tcttccataa
251 aaattccaat caaaaaaaaa agggtgaagc atatacgtac tgaactatat
301 caaatgatta ataacaaccc gaatccttac ttttttttcg aatttttata
351 tatttatgaa atgaaaaaat ttatatgaaa aaaaaaaaaa atggaagaat
401 tttttggaat cgatttcaaa ttgaaagaag aatcaaatat tcattcatca
451 aataattcac tccatagtct gatagatttt ttgaagaact aattaatcgg
501 acgagaatga agatagagtc ccgttctaca tgtcaatact gacaacaatg
551 aaatttataa ttaagaagaa aatccgtcga ctttaaaaat cgtgagggtt
601 caagtccctc tatcccc
View other 6 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
617 |
598 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.