Match details
Record ID: |
OM174296.1 |
Database: |
nt |
Go to original record |
Description: |
Papaver somniferum isolate HN1 chloroplast, complete genome. |
Taxon: |
Papaver somniferum |
Original size: |
152957 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46260 |
46850 |
+ |
591 bp |
|
1 cgaaatcggt agacgctacg gacttgattg aattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctgttttcag aaaaaaatta aggtatttct
151 gaaagcgaga ataaaaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaatgaatg gagttgactg cgttggtaga ggactccttc tattcaattt
251 gaatttaaac tccataaaga atgagggata aacctacgat acgtaagtat
301 acgtactgaa atatcaaaga ttctattaat gtcgccctaa aattttttta
351 cataaaaaaa aggaataatt tttgtgaatc tattccaagt tgaaggaaga
401 atcgaatatt cagtaatcaa accattcact ccatagtctg atatatcttt
451 tgacgaactg attaatcgga cgagaataaa gatagagtcc cgttctacat
501 gtcaatatca atacagacaa caatgaaatt tatagtaaga ggaaaatccg
551 tcgactttat aaatcgtgag ggttcaagtc cctctatccc c
View other 5 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.66e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
591 |
572 |
2.66e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.