Match details
Record ID: |
OM174292.1 |
Database: |
nt |
Go to original record |
Description: |
Papaver radicatum subsp. macrostigmum chloroplast, complete genome. |
Taxon: |
Papaver radicatum subsp. macrostigmum |
Original size: |
153767 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46607 |
47202 |
+ |
596 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctgttttcag aaaacaaatt aagggatttc
151 tgaaagcgag aataaaaaaa ggataggtgc agagactcaa tggaagctgt
201 tctaatgaat ggagttgact gcgttggtag aggaatcctt ctattaaatt
251 tgaatttaaa ctccataaag aatgagggat gaacctatat acgatacgta
301 cgtatacgta ctgaaatatc aaagattcta ttaatgtcgc cctaactatt
351 tttttacata aaaaaagaaa tcatttttgt gaatttattc caagttgaag
401 gaagaatcga aaattcagtg atcaaaccat tcactccata gtctgataga
451 tcttttgatg aactgattaa tcggacgaga ataaagatag agtcccgttc
501 tacatgtcaa tatcaatacc gacaacaatg aaatttatag taagaggaaa
551 atccgtcgac tttataaatc gtgagggttc aagtccctct atcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
596 |
577 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.