Match details
Record ID: |
OM176664.1 |
Database: |
nt |
Go to original record |
Description: |
Actinostephanus enpingensis chloroplast, complete genome. |
Taxon: |
Actinostephanus enpingensis |
Original size: |
154338 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48396 |
48939 |
+ |
544 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acctactaag tgaagacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atccttgttt tctcaaaaca agcgttcaga
151 gagcgaaaaa gaggataggt gcagagactc aacggaagct gttctaacaa
201 acggagttga ctgcgttggt agaggaatcg aaacttcaga aaggatgaag
251 gataaacgta tctattgaat actattgatg attaataatg gcccgaatct
301 gtatctgggt ttttgtatat gaaaaatgga agaattggtg tgaattgatt
351 tcacattgaa tcaaatatta attgatcaaa tgattcgctc catagtccga
401 tagatctctt aaagaactta ttattcggac gagaataaag atagagtccc
451 gttctacatg tcaataccgg caacaatgaa acttatagta agaggaaaat
501 ccgttgactt taaaaatcgt gagggttcaa gtccctctat cccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.45e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
544 |
525 |
2.45e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.