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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MZ905466.1 nt Wenchengia alternifolia isolate VN ... 152398 bp Wenchengia alternifolia QL-PLN-00-007 572 bp View
MZ905467.1 nt Wenchengia alternifolia isolate VN ... 150204 bp Wenchengia alternifolia QL-PLN-00-007 573 bp View
MZ905468.1 nt Wenchengia alternifolia isolate VN ... 150219 bp Wenchengia alternifolia QL-PLN-00-007 573 bp View
MZ926846.1 nt Zea mays voucher ZM-01 tRNA-Leu (tr... 956 bp Zea mays QL-PLN-00-007 532 bp View
MZ954872.1 nt Scutellaria microviolacea chloropla... 152092 bp Scutellaria microviolacea QL-PLN-00-007 551 bp View
MZ958825.1 nt Clerodendrum cyrtophyllum chloropla... 152052 bp Clerodendrum cyrtophyllum QL-PLN-00-007 558 bp View
MZ958832.1 nt Scoparia dulcis chloroplast, comple... 153701 bp Scoparia dulcis QL-PLN-00-007 574 bp View
MZ997426.1 nt Rheum alexandrae voucher ZHJ18-08 c... 161698 bp Rheum alexandrae QL-PLN-00-007 596 bp View
MZ997430.1 nt Rheum pumilum voucher ZHJ18-48 chlo... 162208 bp Rheum pumilum QL-PLN-00-007 615 bp View
MZ997431.1 nt Rheum delavayi voucher ZHJ18-31 chl... 162374 bp Rheum delavayi QL-PLN-00-007 617 bp View
NRN_EA679622 nrnl1 Sequence 58501 from patent US 73651... 36527 bp unidentified QL-PLN-00-007 614 bp View
NRN_EA703943 nrnl1 Sequence 82822 from patent US 73651... 4745 bp unidentified QL-PLN-00-007 615 bp View
NRN_GX327302 nrnl1 Sequence 21377 from patent US 7750207. 2870 bp unidentified QL-PLN-00-007 532 bp View
NRN_GX914744 nrnl1 Sequence 10652 from patent US 7868149. 63097 bp unidentified QL-PLN-00-007 616 bp View
NRN_GX917680 nrnl1 Sequence 13588 from patent US 7868149. 8037 bp unidentified QL-PLN-00-007 615 bp View
NRN_GX918448 nrnl1 Sequence 14356 from patent US 7868149. 23390 bp unidentified QL-PLN-00-007 615 bp View
NRN_GX922499 nrnl1 Sequence 18407 from patent US 7868149. 16684 bp unidentified QL-PLN-00-007 615 bp View
NRN_GX923123 nrnl1 Sequence 19031 from patent US 7868149. 12880 bp unidentified QL-PLN-00-007 615 bp View
NRN_GX926227 nrnl1 Sequence 22135 from patent US 7868149. 67934 bp unidentified QL-PLN-00-007 615 bp View
NRN_GX929536 nrnl1 Sequence 25444 from patent US 7868149. 1428 bp unidentified QL-PLN-00-007 614 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.