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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT974543.1 nt Catalpa bungei chloroplast, complet... 158144 bp Catalpa bungei QL-PLN-00-007 563 bp View
MT980792.1 nt Lycopus lucidus var. hirtus chlorop... 152096 bp Lycopus lucidus var. hirtus QL-PLN-00-007 558 bp View
MT982396.1 nt Sinopodophyllum hexandrum voucher S... 157247 bp Sinopodophyllum hexandrum QL-PLN-00-007 539 bp View
MV705960.1 emblrelpat Sequence 4319 from patent US 10774340. 13722 bp unidentified QL-PLN-00-007 615 bp View
MW001303.1 nt Oryza sativa temperate japonica sub... 134556 bp Oryza sativa temperate japonica subgroup QL-PLN-00-007 615 bp View
MW007169.1 nt Phyllostachys edulis cultivar curvi... 139678 bp Phyllostachys edulis QL-PLN-00-007 614 bp View
MW007170.1 nt Phyllostachys edulis chloroplast, c... 139678 bp Phyllostachys edulis QL-PLN-00-007 614 bp View
MW007379.1 nt Rehmannia glutinosa isolate jk3 chl... 153637 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MW007380.1 nt Rehmannia glutinosa isolate cw6 chl... 153678 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MW007381.1 nt Rehmannia glutinosa isolate jz chlo... 153499 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MW007382.1 nt Rehmannia glutinosa isolate ft1 chl... 153499 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MW007383.1 nt Rehmannia glutinosa isolate jk1 chl... 153499 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MW007384.1 nt Rehmannia glutinosa isolate jk2 chl... 153499 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MW013795.1 nt Rehmannia glutinosa voucher CMQ1622... 153797 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MW013796.1 nt Rehmannia chingii voucher ZYH160425... 153328 bp Rehmannia chingii QL-PLN-00-007 563 bp View
MW017634.1 nt Fagopyrum leptopodum chloroplast, c... 159337 bp Fagopyrum leptopodum QL-PLN-00-007 558 bp View
MW020353.1 nt Chloris virgata chloroplast, comple... 136065 bp Chloris virgata QL-PLN-00-007 532 bp View
MW042817.1 nt Solanaceae sp. YYL-2022 cultivar He... 155203 bp Solanaceae sp. YYL-2022 QL-PLN-00-007 571 bp View
MW044609.1 nt Hippuris vulgaris isolate A chlorop... 152763 bp Hippuris vulgaris QL-PLN-00-007 565 bp View
MW044610.1 nt Hippuris vulgaris isolate B chlorop... 152713 bp Hippuris vulgaris QL-PLN-00-007 565 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.