Match details
Record ID: |
MW007379.1 |
Database: |
nt |
Go to original record |
Description: |
Rehmannia glutinosa isolate jk3 chloroplast, complete genome. |
Taxon: |
Rehmannia glutinosa |
Original size: |
153637 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47456 |
48018 |
+ |
563 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaacccagg aattaagaaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcaaaa
151 aacgaaaata aagggatagg tgcagagact caatggaaga tgttctaaca
201 aatggggttg actgcgttgg tagaggaatc tttccaccga aacttcagaa
251 aggataaagg ataaacgtat ctattgaata ctatatcaaa tgattaatga
301 tggcccgaat ctgtatctgt attttgtaat atgaaaaatg aaagaattgg
351 tgtgaattga ttccacattg aagaaagaat caaatattca ttcatcaaat
401 tattcactcc atagtccgat agatctttta aagaactgat taatcggacg
451 agaataaaga tagagtccca ttctacatgt caatatcgac aacaatgaaa
501 tttctagtaa gaggaaaatc cgtcgacttt aaaaatcgtg agggttcaag
551 tccctctatc ccc
View other 11 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
563 |
544 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.