Amplicon details

Amplicon:

563 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaacccagg aattaagaaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcaaaa
151   aacgaaaata aagggatagg tgcagagact caatggaaga tgttctaaca
201   aatggggttg actgcgttgg tagaggaatc tttccaccga aacttcagaa
251   aggataaagg ataaacgtat ctattgaata ctatatcaaa tgattaatga
301   tggcccgaat ctgtatctgt attttgtaat atgaaaaatg aaagaattgg
351   tgtgaattga ttccacattg aagaaagaat caaatattca ttcatcaaat
401   tattcactcc atagtccgat agatctttta aagaactgat taatcggacg
451   agaataaaga tagagtccca ttctacatgt caatatcgac aacaatgaaa
501   tttctagtaa gaggaaaatc cgtcgacttt aaaaatcgtg agggttcaag
551   tccctctatc ccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT732492.1 nt Rehmannia glutinosa cultivar Wen 85... 153499 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MW007379.1 nt Rehmannia glutinosa isolate jk3 chl... 153637 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MW007380.1 nt Rehmannia glutinosa isolate cw6 chl... 153678 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MW007381.1 nt Rehmannia glutinosa isolate jz chlo... 153499 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MW007382.1 nt Rehmannia glutinosa isolate ft1 chl... 153499 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MW007383.1 nt Rehmannia glutinosa isolate jk1 chl... 153499 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MW007384.1 nt Rehmannia glutinosa isolate jk2 chl... 153499 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MW013795.1 nt Rehmannia glutinosa voucher CMQ1622... 153797 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MW013796.1 nt Rehmannia chingii voucher ZYH160425... 153328 bp Rehmannia chingii QL-PLN-00-007 563 bp View
OR601178.1 nt Rehmannia chingii chloroplast, comp... 153807 bp Rehmannia chingii QL-PLN-00-007 563 bp View
MG977438.1 nt Rehmannia glutinosa cultivar Jiwhan... 153499 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MG977439.1 nt Rehmannia glutinosa isolate IM16053... 153680 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.