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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT727082.1 nt Momordica charantia chloroplast, co... 161949 bp Momordica charantia QL-PLN-00-007 603 bp View
MT731950.1 nt Oryza alta isolate BOP022646 chloro... 134824 bp Oryza alta QL-PLN-00-007 615 bp View
MT731953.1 nt Caryopteris tangutica isolate BOP01... 151542 bp Caryopteris tangutica QL-PLN-00-007 562 bp View
MT731954.1 nt Galeopsis bifida isolate BOP018180 ... 152587 bp Galeopsis bifida QL-PLN-00-007 562 bp View
MT732492.1 nt Rehmannia glutinosa cultivar Wen 85... 153499 bp Rehmannia glutinosa QL-PLN-00-007 563 bp View
MT740257.1 nt Pycnostachys reticulata isolate BOP... 152480 bp Pycnostachys reticulata QL-PLN-00-007 550 bp View
MT742244.1 nt Trema angustifolia chloroplast, com... 157080 bp Trema angustifolia QL-PLN-00-007 589 bp View
MT742245.1 nt Trema cannabinum chloroplast, compl... 157902 bp Trema cannabina QL-PLN-00-007 589 bp View
MT742246.1 nt Trema cannabinum chloroplast, compl... 157196 bp Trema cannabina QL-PLN-00-007 589 bp View
MT742247.1 nt Trema levigatum chloroplast, comple... 157356 bp Trema levigatum QL-PLN-00-007 589 bp View
MT742248.1 nt Trema tomentosum chloroplast, compl... 157272 bp Trema tomentosum QL-PLN-00-007 589 bp View
MT742249.1 nt Trema tomentosum chloroplast, compl... 157157 bp Trema tomentosum QL-PLN-00-007 589 bp View
MT762363.1 nt Catalpa bungei chloroplast, complet... 158213 bp Catalpa bungei QL-PLN-00-007 563 bp View
MT780803.1 nt Neonauclea jagorii voucher CB15 199... 1732 bp Neonauclea jagorii QL-PLN-00-007 571 bp View
MT780805.1 nt Neonauclea lanceolata subsp. gracil... 1732 bp Neonauclea lanceolata subsp. gracilis QL-PLN-00-007 571 bp View
MT780809.1 nt Neonauclea puberula voucher RBB 015... 1731 bp Neonauclea puberula QL-PLN-00-007 570 bp View
MT783420.1 nt Catalpa fargesii f. duclouxii chlor... 158164 bp Catalpa fargesii f. duclouxii QL-PLN-00-007 563 bp View
MT806099.1 nt Calligonum bakuense plastid, comple... 162128 bp Calligonum bakuense QL-PLN-00-007 594 bp View
MT806102.1 nt Eremochloa ophiuroides chloroplast,... 139107 bp Eremochloa ophiuroides QL-PLN-00-007 526 bp View
MT806177.1 nt Hemerocallis fulva chloroplast, com... 156059 bp Hemerocallis fulva QL-PLN-00-007 584 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.