Match details
Record ID: |
MT742246.1 |
Database: |
nt |
Go to original record |
Description: |
Trema cannabinum chloroplast, complete genome. |
Taxon: |
Trema cannabina |
Original size: |
157196 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49476 |
50064 |
+ |
589 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctaccaag tgataacttt caaattcaga gaaaccccgg aattaaaaaa
101 atggggcaat cctgagccaa atccggtttt ctgaaaacaa acaaggattc
151 agaaagcgat aataaaaaag aataggatag gtgcagagac tcaatggaag
201 ctgttctaac aaatggagtt ggctgcgttg cgttaataaa ggaatccctt
251 ccatcgaaac tccagaaagg atgaagaata aacgtatata cgtacaaaaa
301 tcctatctcc aaataattaa tgaaaacccg aatccgtatt tcttttaatt
351 ttcatgaaaa aggaaagaat tgttgtgaat caattttaag ttgaaaaacg
401 aatcgaatat tcattgatca aattatttac tccatcaaaa tctgatagat
451 cttttgaaga cttgattaat cggatgagaa taaagataga gtcccattct
501 acatgtcaat attgataaga atgaaattta tagtaagagg aaaatccgtc
551 gactttaaaa atcgtgaggg ttcaagtccc tctatcccc
View other 7 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.65e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
589 |
570 |
2.65e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.