Amplicon details |
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Amplicon: |
589 bp | |
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa 51 acctaccaag tgataacttt caaattcaga gaaaccccgg aattaaaaaa 101 atggggcaat cctgagccaa atccggtttt ctgaaaacaa acaaggattc 151 agaaagcgat aataaaaaag aataggatag gtgcagagac tcaatggaag 201 ctgttctaac aaatggagtt ggctgcgttg cgttaataaa ggaatccctt 251 ccatcgaaac tccagaaagg atgaagaata aacgtatata cgtacaaaaa 301 tcctatctcc aaataattaa tgaaaacccg aatccgtatt tcttttaatt 351 ttcatgaaaa aggaaagaat tgttgtgaat caattttaag ttgaaaaacg 401 aatcgaatat tcattgatca aattatttac tccatcaaaa tctgatagat 451 cttttgaaga cttgattaat cggatgagaa taaagataga gtcccattct 501 acatgtcaat attgataaga atgaaattta tagtaagagg aaaatccgtc 551 gactttaaaa atcgtgaggg ttcaagtccc tctatcccc |
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| Record ID | Database | Record description | Record length | Taxon | Method | Amplicon size | Match details |
|---|---|---|---|---|---|---|---|
| MT742244.1 | nt | Trema angustifolia chloroplast, com... | 157080 bp | Trema angustifolia | QL-PLN-00-007 | 589 bp | View |
| MT742246.1 | nt | Trema cannabinum chloroplast, compl... | 157196 bp | Trema cannabina | QL-PLN-00-007 | 589 bp | View |
| MT742248.1 | nt | Trema tomentosum chloroplast, compl... | 157272 bp | Trema tomentosum | QL-PLN-00-007 | 589 bp | View |
| MT742249.1 | nt | Trema tomentosum chloroplast, compl... | 157157 bp | Trema tomentosum | QL-PLN-00-007 | 589 bp | View |
| MT165918.1 | nt | Trema orientale voucher YXing886 ch... | 157174 bp | Trema orientale | QL-PLN-00-007 | 589 bp | View |
| OQ871457.1 | nt | Trema orientale chloroplast, comple... | 157134 bp | Trema orientale | QL-PLN-00-007 | 589 bp | View |
| KY931667.1 | nt | Trema orientalis isolate TorRG16x01... | 131846 bp | Trema orientale | QL-PLN-00-007 | 589 bp | View |
| KY931668.1 | nt | Trema orientalis isolate TorRG33x02... | 131844 bp | Trema orientale | QL-PLN-00-007 | 589 bp | View |
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.