Match details
Record ID: |
MT780803.1 |
Database: |
nt |
Go to original record |
Description: |
Neonauclea jagorii voucher CB15 199 (USTH) trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Neonauclea jagorii |
Original size: |
1732 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
749 |
1319 |
+ |
571 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaagggcaat cctgagccaa atcctgtttt ccgaaaccaa aggttcagaa
151 agtgaaaaag ggataggtgc agagactcaa cggaagctgt tctaacaaat
201 ggagttagat gcattagtag agagatcttt ccatcgaaaa ttcagaaaga
251 atgaagtgaa agataaacgt atatacatac gtattgaata ctatatcaaa
301 tgattaataa cgacccgact gaatctgtat ttttatatat gaaaaacaga
351 agaattggtg tgaatagatt ccacattgaa gaaagaatcg aatattcatt
401 gatcaaatga ttcactccat agtctgatag atcttttcaa gaactgatta
451 atcggacgag aataaagata gagtcccatt ctacatgtca atgccggcaa
501 caatgaaatt tatagtaaga ggaaaatccg tcgactttaa aaatcgtgag
551 ggttcaagtc cctctatccc c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
571 |
552 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.