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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT671999.1 nt Veronica ovata subsp. kiusiana chlo... 152249 bp Veronica ovata subsp. kiusiana QL-PLN-00-007 574 bp View
MT679705.1 nt Panicum maximum chloroplast, comple... 138186 bp Megathyrsus maximus QL-PLN-00-007 613 bp View
MT679706.1 nt Cynodon dactylon chloroplast, compl... 134072 bp Cynodon dactylon QL-PLN-00-007 621 bp View
MT712162.1 nt Papaver somniferum chloroplast, com... 152933 bp Papaver somniferum QL-PLN-00-007 591 bp View
MT712164.1 nt Fagopyrum tataricum chloroplast, co... 159272 bp Fagopyrum tataricum QL-PLN-00-007 577 bp View
MT712787.1 nt Brachypodium distachyon chloroplast... 135186 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
MT712788.1 nt Cucumis melo subsp. agrestis chloro... 156016 bp Cucumis melo subsp. agrestis QL-PLN-00-007 599 bp View
MT712789.1 nt Oryza nivara chloroplast, complete ... 134502 bp Oryza nivara QL-PLN-00-007 615 bp View
MT721151.1 nt Zea mays chloroplast, complete genome. 140452 bp Zea mays QL-PLN-00-007 532 bp View
MT721155.1 nt Saccharum spontaneum chloroplast, c... 141184 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MT726928.1 nt Oryza grandiglumis chloroplast, com... 135179 bp Oryza grandiglumis QL-PLN-00-007 615 bp View
MT726929.1 nt Oryza australiensis chloroplast, co... 135193 bp Oryza australiensis QL-PLN-00-007 614 bp View
MT726930.1 nt Oryza officinalis chloroplast, comp... 134850 bp Oryza officinalis QL-PLN-00-007 615 bp View
MT726931.1 nt Oryza coarctata chloroplast, comple... 136277 bp Oryza coarctata QL-PLN-00-007 615 bp View
MT726932.1 nt Oryza punctata chloroplast, complet... 134829 bp Oryza punctata QL-PLN-00-007 615 bp View
MT726933.1 nt Oryza longiglumis chloroplast, comp... 135637 bp Oryza longiglumis QL-PLN-00-007 614 bp View
MT726934.1 nt Oryza alta chloroplast, complete ge... 135176 bp Oryza alta QL-PLN-00-007 615 bp View
MT726937.1 nt Oryza ridleyi chloroplast, complete... 135731 bp Oryza ridleyi QL-PLN-00-007 614 bp View
MT726938.1 nt Oryza minuta chloroplast, complete ... 134590 bp Oryza minuta QL-PLN-00-007 616 bp View
MT726939.1 nt Oryza brachyantha chloroplast, comp... 134644 bp Oryza brachyantha QL-PLN-00-007 580 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.