Match details
Record ID: |
MT726938.1 |
Database: |
nt |
Go to original record |
Description: |
Oryza minuta chloroplast, complete genome. |
Taxon: |
Oryza minuta |
Original size: |
134590 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46409 |
47024 |
+ |
616 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggcaacttc caaattcaga gaaaccctgg aattaaaaaa
101 ggggcaatcc tgagccaaat ccgtgttttg agaaaacaag cggttctcga
151 actagaaccc aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gagttaatta cgttgtgttg ctagcggaac tcccttctaa
251 attagggaaa gaagggcttt cgaaatctaa tacacacgta tagatactgg
301 catagcaaac gattaatcac agaactcata tcataatata ggttctttaa
351 ttctttttta aaatgaaaat aggaatgatt atgaaataga aaatttcata
401 atttttttag aattgttgtg aatccattcc aatcgaatat tgagtaatca
451 aatccttcga ttcatagttt tcgaaatctt tttaaaactg gattaatcgg
501 acgaggataa agagagagtc ccattctaca tgtcaatact gacaacaatg
551 aaatttctag taaaaggaaa atccgtcgac tttctaagtc gtgagggttc
601 aagtccctct atcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
616 |
597 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.