Match details
Record ID: |
MT712787.1 |
Database: |
nt |
Go to original record |
Description: |
Brachypodium distachyon chloroplast, complete genome. |
Taxon: |
Brachypodium distachyon |
Original size: |
135186 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46440 |
47055 |
+ |
616 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tagtatggaa
51 acctgctaag tgttaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaagg ggttctcgaa
151 ctagaatcca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg agttaattta tttaggttgt tttggtagtg gaaatccttt
251 taaattagag aaagaaggga tttttacatc taataaacac gtatagatac
301 taacatagta aacgattaat cacagaatcc aagtataaca taggttcttt
351 attctttttt agaatgaaat taggaaggat tatgaaataa aaaattaata
401 aattttttag aattattgtg aatccattct aattgaatct tgagtaatca
451 aatccttcaa ttcaaagtac ttgagatctt ttaaaaagtg gattaatcgg
501 acgaggacaa agagagagtc ccattctaca tgtcaatact gacaacaatg
551 aaatttcgag taaaaggaaa atccgtcgac tttataagtt gtgagggttc
601 aagtccctct atcccc
View other 87 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
616 |
597 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.