Match details
Record ID: |
MT712164.1 |
Database: |
nt |
Go to original record |
Description: |
Fagopyrum tataricum chloroplast, complete genome. |
Taxon: |
Fagopyrum tataricum |
Original size: |
159272 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47830 |
48406 |
+ |
577 bp |
|
1 cgaaatcggt agacgctacg gacttaatta ggttgagcct tagtagggaa
51 acctactagg tgagaacttt caaattcaga gaaaccctgg aatcaaaaaa
101 cgggtaatcc tgagccaact cctgctttcc aaaagaaaga ataaatacag
151 gataggtgca gagactcaat ggaagctgtt ctaacaaaat ggagttgact
201 gtcttgcgtt gttacaagaa ctcttccgtc gaaactcaaa aaaggatgaa
251 gaataaacgt atacgcatac atacgtcaat ataaaatact aaaaaaaatg
301 aaaaatattc ataacgaccc gactttttct tttatgacta tgaaaaaagg
351 aagaattgtt atgaatcgat ttcacgatga agaaagaatc gaatattctt
401 ttagtaaata aaagcattta cttccccgtc tgatagatct tttgaaaaac
451 cgatccatcg gatgagaatg aagatagagt cccattctac gtgtcaatcc
501 tgacaacaaa gaaatttata gtaagaggaa aatccgtcga ctttataaat
551 cgtgagggtt caagtccctc tatcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.60e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
577 |
558 |
2.60e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.