European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT261160.1 nt Lilium callosum plastid, complete g... 152630 bp Lilium callosum QL-PLN-00-007 616 bp View
MT261161.1 nt Lilium cernuum plastid, complete ge... 152553 bp Lilium cernuum QL-PLN-00-007 612 bp View
MT261162.1 nt Lilium formosanum plastid, complete... 152610 bp Lilium formosanum QL-PLN-00-007 609 bp View
MT261163.1 nt Lilium hansonii plastid, complete g... 152618 bp Lilium hansonii QL-PLN-00-007 618 bp View
MT261171.1 nt Streptopus ovalis chloroplast, comp... 157359 bp Streptopus ovalis QL-PLN-00-007 593 bp View
MT261173.1 nt Tricyrtis macropoda chloroplast, co... 155453 bp Tricyrtis macropoda QL-PLN-00-007 586 bp View
MT271604.1 nt Pseudognaphalium luteoalbum voucher... 153072 bp Pseudognaphalium luteoalbum QL-PLN-00-007 521 bp View
MT273356.1 nt Cinna latifolia voucher CAN:Gillesp... 1784 bp Cinna latifolia QL-PLN-00-007 620 bp View
MT273358.1 nt Poa caucasica voucher US:Soreng 799... 1813 bp Poa caucasica QL-PLN-00-007 611 bp View
MT273359.1 nt Poa compressa voucher CAN:Gillespie... 1794 bp Poa compressa QL-PLN-00-007 611 bp View
MT273363.1 nt Poa lipskyi subsp. lipskyi voucher ... 1794 bp Poa lipskyi subsp. lipskyi QL-PLN-00-007 611 bp View
MT273374.1 nt Poa skvortzovii voucher US:Soreng &... 1794 bp Poa skvortzovii QL-PLN-00-007 611 bp View
MT273375.1 nt Poa sphondylodes voucher US:Soreng ... 1793 bp Poa sphondylodes QL-PLN-00-007 611 bp View
MT273379.1 nt Poa veresczaginii voucher CAN:Olono... 1795 bp Poa veresczaginii QL-PLN-00-007 611 bp View
MT312247.1 nt Scutellaria tsinyunensis chloroplas... 152066 bp Scutellaria tsinyunensis QL-PLN-00-007 552 bp View
MT317098.1 nt Isodon lophanthoides chloroplast, c... 152195 bp Isodon lophanthoides QL-PLN-00-007 533 bp View
MT317099.1 nt Isodon serra chloroplast, complete ... 152676 bp Isodon serra QL-PLN-00-007 554 bp View
MT319818.1 nt Catalpa speciosa chloroplast, compl... 158239 bp Catalpa speciosa QL-PLN-00-007 563 bp View
MT328397.1 nt Platostoma chinense chloroplast, co... 152547 bp Platostoma chinense QL-PLN-00-007 543 bp View
MT381996.1 nt Luffa acutangula chloroplast, compl... 157202 bp Luffa acutangula QL-PLN-00-007 594 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.