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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MK771096.1 nt Pseudognaphalium sp. CHR639322 chlo... 152903 bp Pseudognaphalium sp. CHR639322 QL-PLN-00-007 521 bp View
MK783315.1 nt Trachelospermum jasminoides chlorop... 155484 bp Trachelospermum jasminoides QL-PLN-00-007 560 bp View
MK783316.1 nt Callicarpa nudiflora chloroplast, p... 154080 bp Callicarpa nudiflora QL-PLN-00-007 562 bp View
MK805127.1 nt Paulownia elongata chloroplast, com... 154670 bp Paulownia elongata QL-PLN-00-007 566 bp View
MK818498.1 nt Siraitia grosvenorii chloroplast, c... 158834 bp Siraitia grosvenorii QL-PLN-00-007 603 bp View
MK830556.1 nt Dicliptera acuminata chloroplast, c... 150738 bp Dicliptera acuminata QL-PLN-00-007 540 bp View
MK833945.1 nt Dicliptera peruviana chloroplast, c... 150811 bp Dicliptera peruviana QL-PLN-00-007 540 bp View
MK833946.1 nt Dicliptera montana chloroplast, com... 150689 bp Dicliptera montana QL-PLN-00-007 540 bp View
MK833947.1 nt Dicliptera ruiziana chloroplast, co... 150750 bp Dicliptera ruiziana QL-PLN-00-007 540 bp View
MK848596.1 nt Dicliptera mucronata chloroplast, c... 150720 bp Dicliptera mucronata QL-PLN-00-007 540 bp View
MK854996.1 nt Calligonum junceum isolate 0299 chl... 162124 bp Calligonum junceum QL-PLN-00-007 594 bp View
MK854997.1 nt Calligonum junceum isolate J2 chlor... 162459 bp Calligonum junceum QL-PLN-00-007 594 bp View
MK862266.1 nt Coffea arabica isolate TY1 chloropl... 155187 bp Coffea arabica QL-PLN-00-007 570 bp View
MK875244.1 nt Coffea arabica isolate TY1 chloropl... 155189 bp Coffea arabica QL-PLN-00-007 570 bp View
MK875771.1 nt Paulownia sp. 'albiphloea' chloropl... 154619 bp Paulownia sp. 'albiphloea' QL-PLN-00-007 566 bp View
MK875778.1 nt Paulownia tomentosa chloroplast, co... 154700 bp Paulownia tomentosa QL-PLN-00-007 565 bp View
MK876615.1 nt Dimorphocalyx beddomei tRNA-Leu (tr... 966 bp Dimorphocalyx beddomei QL-PLN-00-007 610 bp View
MK876617.1 nt Dimorphocalyx glabellus tRNA-Leu (t... 965 bp Dimorphocalyx glabellus QL-PLN-00-007 611 bp View
MK876620.1 nt Dimorphocalyx moluccensis tRNA-Leu ... 961 bp Dimorphocalyx moluccensis QL-PLN-00-007 609 bp View
MK876638.1 nt Trigonostemon lii tRNA-Leu (trnL) g... 972 bp Trigonostemon lii QL-PLN-00-007 617 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.